PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0014780.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 243aa    MW: 26667.3 Da    PI: 9.6533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0014780.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191579148
                               TSSS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEd++l+  v+q+G g                  +W+tIa+ ++ +Rt++++k++w+++l
  Rmu_sc0014780.1_g000004.1 15 RGAWTPEEDKKLLAFVQQHGHGswrslpqkaaangvihacRWSTIAAQLP-KRTDNEIKNYWNTHL 79
                               89************************************************.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEKQSHTVAF PGIRRGAWTP EEDKKLLAFV QQHGHGSWRS LPQKAAANGV IHACRWSTIA  60
AQLPKRTDNE IKNYWNTHLK KRLAKIGFDP VTHKPKTAIL ASADGGDPKN LSNLSHIAQW  120
ETARLQAEAR FSGQSKLLIS HDQPPRFGPV PVPQCLDMNE RAREIRLLLK SILAADSGAQ  180
LGGGIGTTAT HVGQEVGSFG KVDVEGLLTN CDQFEAPRTI LGLRRQSSIE EVKEACDNVS  240
SSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.15e-49MYB family protein