PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0014786.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 1015aa MW: 112557 Da PI: 8.7677

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0014786.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.5	7.1e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g++ +qV+ +F +R + +k Rmu_sc0014786.1_g000002.1 65 KRPRDLLNPKAIKYMQSVFSIKDAITKKESREISALFGVSVSQVRDFFNSQRSRVRK 121 799**************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1015 aa Download sequence
MEDLSELKIG NSVESFHKFV DSQRELFHRQ IDELQKIVVT QCKLTGANPL SQEMAAGALS 60 INIGKRPRDL LNPKAIKYMQ SVFSIKDAIT KKESREISAL FGVSVSQVRD FFNSQRSRVR 120 KIVQLSREKA IRSTEHKELL EGVPTSSDPL IPINPLPLNT IDPSNVEDAP SCSTQDDTLS 180 GLDDVDKHFV ENIFNLMRKE ETFSGQVKVL ELILRIQNSS VLCWFLTKGG VMILVTWLTQ 240 AADEEQTSVL LVILKVLCHL PLSKALPVHM SAILQSVNRL RFYRTPEISN RARVLLSRWS 300 KSLARSQALK KPNGMKTSND SQELALLKQS IDEAIGDDPW NSNGDVNEDI LALPFESADK 360 LRKLESSEPV KLLTASSDDS NKKHILGVSS SQFRGRRKVQ LVEQPGQKTA GRSSQVAKTT 420 PVSQARPMSV DDIQKAKLRA QYMQSKYGKS ASSNENKEVK AEGVNKPPIA QASILPAVPN 480 VPVQSSIEES KKPVSLPLKE RETHDISLQP IGSFQTIAPK LKTDMKEHIW EKCRRVQVPW 540 KTPPEIKLNP GWRVGGGENG KEMEGQKNRN HREQETIYKT FKEIPPNPKE PWDIEMDYDD 600 SLTPVIPTEQ PPDTDCTETQ PSHSREVNNA AETLVVPSQG VNSVVSMVPL TNMASSTAEP 660 DLELLAVLLK NPELVFALTS GQAGNLSSED TVKLLDMIKA GGAGFAGNLN GLASKMEEKV 720 EVSLPSPTPS SNPGTSGWRP EATRNAFAQQ NSMQNRVSPG YSSPAMAANS NLVLSQLPSA 780 LTSPLPQRLS AAQQAVPAYS PEHVHQFPHT TTVSHLQHNH SNMAVPSVWG ESTSNGKPGP 840 SYNSYNVAAE RQPNSLPPPF SSNLTHQQRR SPQPLQQQTH YSDSPHYSES PYFSKPPTGK 900 PAPLSDSWRA GRQGNYHYLE NQNQYYNAPS YGGPLQQQPQ LRSGPPYEGN EYASNGGGFE 960 SWSPPEDSPA RNADYNMHGR NAYRPTDRSR QRNTQTPGYR DYSRQGHRWP DRGRH

Sequence ? help Back to Top

Protein Sequence Length: 1015 aa Download sequence

MEDLSELKIG NSVESFHKFV DSQRELFHRQ IDELQKIVVT QCKLTGANPL SQEMAAGALS  60
INIGKRPRDL LNPKAIKYMQ SVFSIKDAIT KKESREISAL FGVSVSQVRD FFNSQRSRVR  120
KIVQLSREKA IRSTEHKELL EGVPTSSDPL IPINPLPLNT IDPSNVEDAP SCSTQDDTLS  180
GLDDVDKHFV ENIFNLMRKE ETFSGQVKVL ELILRIQNSS VLCWFLTKGG VMILVTWLTQ  240
AADEEQTSVL LVILKVLCHL PLSKALPVHM SAILQSVNRL RFYRTPEISN RARVLLSRWS  300
KSLARSQALK KPNGMKTSND SQELALLKQS IDEAIGDDPW NSNGDVNEDI LALPFESADK  360
LRKLESSEPV KLLTASSDDS NKKHILGVSS SQFRGRRKVQ LVEQPGQKTA GRSSQVAKTT  420
PVSQARPMSV DDIQKAKLRA QYMQSKYGKS ASSNENKEVK AEGVNKPPIA QASILPAVPN  480
VPVQSSIEES KKPVSLPLKE RETHDISLQP IGSFQTIAPK LKTDMKEHIW EKCRRVQVPW  540
KTPPEIKLNP GWRVGGGENG KEMEGQKNRN HREQETIYKT FKEIPPNPKE PWDIEMDYDD  600
SLTPVIPTEQ PPDTDCTETQ PSHSREVNNA AETLVVPSQG VNSVVSMVPL TNMASSTAEP  660
DLELLAVLLK NPELVFALTS GQAGNLSSED TVKLLDMIKA GGAGFAGNLN GLASKMEEKV  720
EVSLPSPTPS SNPGTSGWRP EATRNAFAQQ NSMQNRVSPG YSSPAMAANS NLVLSQLPSA  780
LTSPLPQRLS AAQQAVPAYS PEHVHQFPHT TTVSHLQHNH SNMAVPSVWG ESTSNGKPGP  840
SYNSYNVAAE RQPNSLPPPF SSNLTHQQRR SPQPLQQQTH YSDSPHYSES PYFSKPPTGK  900
PAPLSDSWRA GRQGNYHYLE NQNQYYNAPS YGGPLQQQPQ LRSGPPYEGN EYASNGGGFE  960
SWSPPEDSPA RNADYNMHGR NAYRPTDRSR QRNTQTPGYR DYSRQGHRWP DRGRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein