PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0015470.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 169aa    MW: 18973.8 Da    PI: 9.9073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0015470.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152345123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y C++C+ sF+++  +  H + H
  Rmu_sc0015470.1_g000015.1 23 YICTICSLSFTTSQAFAGHHNAH 45
                               89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MFRKPNLGSA ESSKKNPNER RSYICTICSL SFTTSQAFAG HHNAHRLRHD RWRLSQEENN  60
ANNPALAEPN DSKRPLLRDP ISSGRPDDDE HNSRPFYTFM TTEPNVRTPV DPGPSPALTS  120
RSWSGPGQDL ASGSRTGENS SYGENTKKRR FSELTRLKTG SADESWLKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147158KKRRFSELTRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.19e-07C2H2 family protein