PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0015624.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 297aa MW: 34129.6 Da PI: 8.6516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0015624.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	31	55	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC+ s++rk++L+rH+ H Rmu_sc0015624.1_g000002.1 31 YVCSvdDCHSSYRRKDHLTRHLFHH 55 99*******************9776 PP
2	zf-C2H2	15	6.9e-05	60	85	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Rmu_sc0015624.1_g000002.1 60 FKCPieNCNREFAFQGNMTRHVSElH 85 89*******************99877 PP
3	zf-C2H2	17.7	1e-05	100	124	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s+L++H +H Rmu_sc0015624.1_g000002.1 100 HVCQekGCGKVFRFASQLRKHEDSH 124 789999***************9888 PP
4	zf-C2H2	15.8	3.9e-05	191	215	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F+ ksnL++H + H Rmu_sc0015624.1_g000002.1 191 KCDyeGCLQTFTKKSNLRQHVKAvH 215 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MQEGSDLNGL VPGGRPPVKL HQVNLSHARP YVCSVDDCHS SYRRKDHLTR HLFHHQGKLF 60 KCPIENCNRE FAFQGNMTRH VSELHSEDCP SANDGCQKQH VCQEKGCGKV FRFASQLRKH 120 EDSHVKLDRV EAFCSEPGCM NQFSNEQCLK AHIQSCHQHI TCEICGTKQL KKNIKSHLRT 180 HEEGDSMERI KCDYEGCLQT FTKKSNLRQH VKAVHLENKP FVCCFPGCGK RFAYKHVKDN 240 HEKSGCHVHA HGDFEEADEK FRSRPRGGRK RQCPTVEMLV RNRVSPSKQS RQGSENF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-114	C2H2 family protein