PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0016265.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 229aa    MW: 25245 Da    PI: 4.7407
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0016265.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.72.3e-1447106356
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                                +R+++t+ ql++L+ l++    r p+ e+++e+  +l    ++++++V++WFqN +a+e+
  Rmu_sc0016265.1_g000001.1  47 NRWAPTPVQLRILKGLYYDkeFRCPTPEQIQEICLHLkqfgQIEDKNVFFWFQNLKARER 106
                                7****************9545899**********************************98 PP
2Wus_type_Homeobox88.75.8e-2945107263
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 
                                a++RW+Ptp Q++iL+ ly+ +  r P+ e+iq+i  +L+++G+iedkNVf+WFQN kaRer 
  Rmu_sc0016265.1_g000001.1  45 ANNRWAPTPVQLRILKGLYYdKEFRCPTPEQIQEICLHLKQFGQIEDKNVFFWFQNLKARERM 107
                                689***************98799**************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MEPRTLQLME LQTQQQMEQQ AQKPTEEGGS NQAAGSSANT PIRQANNRWA PTPVQLRILK  60
GLYYDKEFRC PTPEQIQEIC LHLKQFGQIE DKNVFFWFQN LKARERMQLR EIRNVRVGGS  120
LDLKFGSTGS TEGGRSIDLN FGSTDFTGDD GSIDLTLGLR SLMERRGGDH QEVETLPLFP  180
EHGENILGNP KATSEEGSAF GYYSGGSGGY NSGSPVSLEL SLNPSGAAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-23WOX family protein