PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0016750.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 328aa    MW: 37078.6 Da    PI: 7.4572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0016750.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.8e-1078102126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                ykt+lC +f   G C+ G++C++aHg
  Rmu_sc0016750.1_g000003.1  78 YKTRLCANFKN-GSCRNGENCNYAHG 102
                                9**********.*************8 PP
2zf-CCCH28.92e-09140162325
                                S---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                                ++lC+ f  + +C+yGdrC+F H
  Rmu_sc0016750.1_g000003.1 140 MKLCKKFNNGEECPYGDRCNFLH 162
                                689******66************ PP
3zf-CCCH42.79e-14220246127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +kt++C+ + +tG C++G++C+FaHg+
  Rmu_sc0016750.1_g000003.1 220 WKTKICNKWEQTGKCPFGEKCHFAHGQ 246
                                8************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MPVQSLYVGG SDAVNCWPPF PMNNEDHHSQ FEQQAPPFKR PRNSEEPQSN PMPYPPMNNS  60
RVHPPNAPVN RGANNIFYKT RLCANFKNGS CRNGENCNYA HGIEDIRQPP PNWQELVTVR  120
DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF LHEEPAKFRE DSGRYRENAA  180
ISIGTTGAPM THVSSTNHSE DNRPVNTGMD AFRVNMKPYW KTKICNKWEQ TGKCPFGEKC  240
HFAHGQAELQ VPGVRVEAEV MTSAPISTKP QTVPANDPST IAMAAIPAAV NEEVQGKKCG  300
FKWRGSKKIN QINRIYGDWL DDVPLVES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-93C3H family protein