PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016854.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 469aa MW: 52482.9 Da PI: 8.6098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016854.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.8e-17	56	100	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed+llv++v+++ g +Wk Ia+ ++ gR++ qc +rwqk+l Rmu_sc0016854.1_g000006.1 56 CWTEKEDKLLVELVRKFNGSNWKQIAAGIP-GRSDVQCLHRWQKVL 100 6***************************.**********986 PP
2	Myb_DNA-binding	59.8	5.8e-19	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ ++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l Rmu_sc0016854.1_g000006.1 106 KGYWTKEEDDCIIKLVEKYGARRWSVIAKFLP-GRIGKQCRERWYNHL 152 689***************************.***********97 PP
3	Myb_DNA-binding	51.4	2.5e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l+ +++q+G++ W+ Ia+ ++ gRt++ +k++w+ Rmu_sc0016854.1_g000006.1 158 KDAWTEEEERILAFYHQQYGNK-WAEIASFLP-GRTDNAIKNYWN 200 679*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MVKVKRELIE EAVVHSDRKF GGVSWPLSEG NCDSPVSEPS PLTWRTSGPT RRSSRCWTEK 60 EDKLLVELVR KFNGSNWKQI AAGIPGRSDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL 120 VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEERILA FYHQQYGNKW 180 AEIASFLPGR TDNAIKNYWN GAFKRKEDSY SPNSNEWDMH PDICIDELGS DLVGVKTVRQ 240 KFDNACSTEW TLGRSYGSEG KSVKSQKCMS SKTGPSGLIN LHTTAESDYS IVATPLGVKS 300 GSCKQIADHT GEYRPFPNSP LVFMDSSPST NSNCTPPKIP LCYSTPTNSV QNVYASSTSP 360 KSRLKSLART FKNTPSIIRK RASRTADHAN FSGASCSTAL NILSLDEAAF NSRDSNSSDY 420 VRGLSSMRHR PETSDAYKSL GRCLEHEFDD ENDSGIANCG KVVSAYVGV

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MVKVKRELIE EAVVHSDRKF GGVSWPLSEG NCDSPVSEPS PLTWRTSGPT RRSSRCWTEK  60
EDKLLVELVR KFNGSNWKQI AAGIPGRSDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL  120
VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEERILA FYHQQYGNKW  180
AEIASFLPGR TDNAIKNYWN GAFKRKEDSY SPNSNEWDMH PDICIDELGS DLVGVKTVRQ  240
KFDNACSTEW TLGRSYGSEG KSVKSQKCMS SKTGPSGLIN LHTTAESDYS IVATPLGVKS  300
GSCKQIADHT GEYRPFPNSP LVFMDSSPST NSNCTPPKIP LCYSTPTNSV QNVYASSTSP  360
KSRLKSLART FKNTPSIIRK RASRTADHAN FSGASCSTAL NILSLDEAAF NSRDSNSSDY  420
VRGLSSMRHR PETSDAYKSL GRCLEHEFDD ENDSGIANCG KVVSAYVGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	5e-76	MYB family protein