PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0016972.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 306aa    MW: 34602.7 Da    PI: 6.7755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0016972.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151764148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg W++eEde+l + ++  G g+W++I++  g+ R++k+c++rw +yl
  Rmu_sc0016972.1_g000001.1 17 RGLWSPEEDEKLMNHIHNSGHGSWSSIPKIAGLERCGKSCRLRWINYL 64
                               788*******************************************97 PP
2Myb_DNA-binding48.52.1e-1570113146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+++++E+ +++d+++  G++ W+ Ia+ m+ gRt++++k++w++
  Rmu_sc0016972.1_g000001.1  70 RGSFSEQEERIIIDVHRVVGNR-WAQIAKQMP-GRTDNEVKNFWNS 113
                                899*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MSINTGHNCC SKQKVKRGLW SPEEDEKLMN HIHNSGHGSW SSIPKIAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSEQEERI IIDVHRVVGN RWAQIAKQMP GRTDNEVKNF WNSCIKKKLI  120
SQGLDPNTHN LIIPAASDSK SSHDSSSLHG SSSSTIPTYL YQSPNMVWTD HFQEQYPRGS  180
QPSMEKSKVQ TISSFSHHSY PSELDIIIEN CKTWGTGSSI ESTTAEPAEM EYMSMKAEQK  240
EESCEVQTEN GSCSVLNYNG RQTSMDASSF GSCNLSNFDF VESTLVPCEM DYHLRPIMDQ  300
LGCYRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-77MYB family protein