PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0017440.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 254aa MW: 27407.3 Da PI: 7.7902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0017440.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.5	3.5e-36	71	177	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasn 84 + + ++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a+ c +++ s s+ Rmu_sc0017440.1_g000006.1 71 RRSTNTKDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTHPAQLCtsTPAISASMP-- 152 57789**********************************************************9999987743222222222.. PP TCP 85 sssg.....................k 89 s + + Rmu_sc0017440.1_g000006.1 153 -SLHcrptistvnttgaagqlvyhlQ 177 .2223344545555555555554331 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGSEMALQDY LSPDPPHHHH HHHQQLPTLK REDPTQNVAV PAAVLTSTTT VTTVTTAEDS 60 ARTTQQLSRT RRSTNTKDRH TKVNGRGRRV RMPAMCAARI FQLTRELGHR SDGETIEWLL 120 RHAEPSIIAA TGTGTHPAQL CTSTPAISAS MPSLHCRPTI STVNTTGAAG QLVYHLQQHP 180 VSQSHHHQQQ QLSCRLDLCQ PLPGLDYSAV AGNNNGGYQN SHGYNHHGFT ALLLQSGVGD 240 GGDAASGEGS QGLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-36	TCP family protein