PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0018468.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 220aa    MW: 24443.9 Da    PI: 8.3941
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0018468.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY247.32.9e-76151832170
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee..lleelkveeenl 82 
                                d+ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++     + a + hl++s+  +  llee +++ +n+
  Rmu_sc0018468.1_g000001.1  15 DHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRGLLlPAAANQRHLGHSFFTPqnLLEEIRNAPSNT 98 
                                78899*******************************************999872456667899999876534777777777777 PP

                      YABBY  83 ksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                                 sn+ +   +++ +++        ee+p++pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+
  Rmu_sc0018468.1_g000001.1  99 FSNQPNMMMNESFMPM----IRGVEEIPKPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPH 178
                                7666555554444444....568899***99989************************************************** PP

                      YABBY 166 ihfgl 170
                                ihfgl
  Rmu_sc0018468.1_g000001.1 179 IHFGL 183
                                ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MSAAASSNTV FSSPDHLSPS DQLCYVHCNF CDTVLAVSVP CSSLFKTVTV RCGHCSNLLS  60
VNMRGLLLPA AANQRHLGHS FFTPQNLLEE IRNAPSNTFS NQPNMMMNES FMPMIRGVEE  120
IPKPPPVVNR PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH  180
FGLMPDQPVK KANIRQDGED MLIKDNGFFS APANLGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-85YABBY family protein