PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0018978.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 396aa MW: 45695.3 Da PI: 4.3816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0018978.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.9	7.3e-18	20	155	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikev.d..iy...kvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratk 79 FhPt+ elv ++L +k++ +++ ++i+++ + iy + Pw++ + ++k +++ +yfFs ++k +++++r++r++ Rmu_sc0018978.1_g000001.1 20 TFHPTEAELVGFFLYNKISMVSNPG-NHIQTFpEicIYgetGLPPWEIWRvyqQFKFpHQDFLYFFSWAKKVSPNKSRNSRTVG 102 5**************99998666.3344443400442224589999632333333344456**************755 PP NAM 80 ..sgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 g+W++tg ++v+ + ++e+ g + + + k+++++ +++ W+m+ey++ Rmu_sc0018978.1_g000001.1 103 sdGGTWSETGAGRPVYISgSEEAFGKVRKFRYEKNKDKTfVHHAAWLMEEYTI 155 4589********9955666899999999977555415699*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MALVDQFMTL DQLDVGVVKT FHPTEAELVG FFLYNKISMV SNPGNHIQTF PEICIYGETG 60 LPPWEIWRVY QQFKFPHQDF LYFFSWAKKV SPNKSRNSRT VGSDGGTWSE TGAGRPVYIS 120 GSEEAFGKVR KFRYEKNKDK TFVHHAAWLM EEYTINQAPD LALCRLKIND KGGGRKKRKR 180 SSDDTNEDQN VRSKKCLKNR KVEPRRDQTS FFDPEEQQEG SASFATTTSQ LILSPYHHED 240 DQAVQVVPEN NYDYDELQQI LFSDDDCTDE NLMFSPTILF DDAQLMVSVD QSIASEQQQQ 300 QDSLAPQQQL EPDNRCQEED QIQQQQDQPS SSHSHEQQQL IGDGDLMIYG QHDFNIPLDN 360 DFLWSDEFNG LLTHEDQLGA VPWRDSDDQF QFSDIL

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MALVDQFMTL DQLDVGVVKT FHPTEAELVG FFLYNKISMV SNPGNHIQTF PEICIYGETG  60
LPPWEIWRVY QQFKFPHQDF LYFFSWAKKV SPNKSRNSRT VGSDGGTWSE TGAGRPVYIS  120
GSEEAFGKVR KFRYEKNKDK TFVHHAAWLM EEYTINQAPD LALCRLKIND KGGGRKKRKR  180
SSDDTNEDQN VRSKKCLKNR KVEPRRDQTS FFDPEEQQEG SASFATTTSQ LILSPYHHED  240
DQAVQVVPEN NYDYDELQQI LFSDDDCTDE NLMFSPTILF DDAQLMVSVD QSIASEQQQQ  300
QDSLAPQQQL EPDNRCQEED QIQQQQDQPS SSHSHEQQQL IGDGDLMIYG QHDFNIPLDN  360
DFLWSDEFNG LLTHEDQLGA VPWRDSDDQF QFSDIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	180	RKKRKR
2	176	181	KKRKRS
3	176	198	KKRKRSSDDTNEDQNVRSKKCLK
4	177	199	KKRKRSSDDTNEDQNVRSKKCLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	3e-10	NAC family protein