PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0019989.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 509aa MW: 56423.2 Da PI: 6.207

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0019989.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00062	54	74	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F + L H+r+H Rmu_sc0019989.1_g000001.1 54 CHICHKGFESGKALGGHMRMH 74 ********************9 PP
2	zf-C2H2	15	7.3e-05	116	134	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk F++k +L H+r+H Rmu_sc0019989.1_g000001.1 116 ECGKIFPSKKSLYGHMRSH 134 7*****************9 PP
3	zf-C2H2	12.7	0.0004	369	391	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF ++ L H+++H Rmu_sc0019989.1_g000001.1 369 YPCSLCNKSFQSHQALGGHMSSH 391 99*******************99 PP
4	zf-C2H2	13.9	0.00016	437	459	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H Rmu_sc0019989.1_g000001.1 437 HQCRFCNRTFPTGQALGGHMRSH 459 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFLEQGN RKPENLAPQF TKICHICHKG 60 FESGKALGGH MRMHVQESKG LIKSSSKSPK PVVVKNSATE FSTSTTDSSG EPVCIECGKI 120 FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR 180 IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDDDDE LDLSEAVHDL 240 MMLAQANPKG AEEATNSNFM TKNEDRDGKD RTVIDYVGVA KKRKQKLEIE EDGDFVSGFD 300 LGKSRNHLEL GVDLKEDSEE ELSDSENSES IVLANMMRRK KRRKMKLEDL EGAVVAQDHQ 360 HQSHHHKVYP CSLCNKSFQS HQALGGHMSS HNKFKNNIQY PVEHDHHKQS GSDDTNNGNA 420 NLTNAATQVD HDQAESHQCR FCNRTFPTGQ ALGGHMRSHW TGPNDPAQSS QTRRKGLDID 480 LNELPPMEYE QGIDYSGDGY ATSSYNSVT

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFLEQGN RKPENLAPQF TKICHICHKG  60
FESGKALGGH MRMHVQESKG LIKSSSKSPK PVVVKNSATE FSTSTTDSSG EPVCIECGKI  120
FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR  180
IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDDDDE LDLSEAVHDL  240
MMLAQANPKG AEEATNSNFM TKNEDRDGKD RTVIDYVGVA KKRKQKLEIE EDGDFVSGFD  300
LGKSRNHLEL GVDLKEDSEE ELSDSENSES IVLANMMRRK KRRKMKLEDL EGAVVAQDHQ  360
HQSHHHKVYP CSLCNKSFQS HQALGGHMSS HNKFKNNIQY PVEHDHHKQS GSDDTNNGNA  420
NLTNAATQVD HDQAESHQCR FCNRTFPTGQ ALGGHMRSHW TGPNDPAQSS QTRRKGLDID  480
LNELPPMEYE QGIDYSGDGY ATSSYNSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	337	344	MRRKKRRK
2	338	344	RRKKRRK
3	340	344	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	6e-16	C2H2 family protein