PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0020711.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 697aa MW: 77351.8 Da PI: 10.7639

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0020711.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	11	44	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 ++W t E++llv av+++G+++W+++a+++ R+ Rmu_sc0020711.1_g000001.1 11 QPWGTLEELLLVSAVNRHGTKRWDSVAKEVK-SRS 44 79****************************9.887 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK 60 FDDLKRRFVV SRQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK 120 KMEEDRDRSL KAEQPAPVKD LHRDGGGEQS ELPEKLAGKP NSGRDFVSDS SERENRSFNE 180 SNSTSQRSEA KANGVVEKKR DADAEPGPER NQPDPVQTET RSEPASANGK VIDDVDDTND 240 RQGGGGAEPT TTGRPGESNE LSGSKRAVVK EVRKQNSDVQ SSASLTRRRK RRRKGGDSSS 300 GEEPEGGEEV SPATTKRVKL VKLEPLVKVL RIVRSHRLGS VFQRRLRSQE SQRYKNLIRE 360 HVDLKVVQSR LEKGAYNDCT HKFFRDLLLV FSNAVVFFRK TAPEHVAALE LRSLVLKEMN 420 DQLPRPRSAV STVKPKPNVE SDITTTTTSM RPSKSSSIVG TGRKKTEVER KVRVTRSSNG 480 RRGGRGQESG GRGKRGVGRP PKKTEMAAAG SGKRGRDNGE ADQGWESAAL GFGLSAPLSV 540 LYGVHLRSEN KKGIVRKVEV EEKEAKVKVN GKKVEDSAPV KVEDKGVRKR RSAQERRGER 600 RSRTTTTSNS KNVEAKIKHE SGGNEVSLRD GLEAPHMAAP PSRTFSSYSN CPWLSVGKWI 660 ICLGGLTSAT STLVWMEGSV HTLVAHRLKV RWMTASF

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK  60
FDDLKRRFVV SRQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK  120
KMEEDRDRSL KAEQPAPVKD LHRDGGGEQS ELPEKLAGKP NSGRDFVSDS SERENRSFNE  180
SNSTSQRSEA KANGVVEKKR DADAEPGPER NQPDPVQTET RSEPASANGK VIDDVDDTND  240
RQGGGGAEPT TTGRPGESNE LSGSKRAVVK EVRKQNSDVQ SSASLTRRRK RRRKGGDSSS  300
GEEPEGGEEV SPATTKRVKL VKLEPLVKVL RIVRSHRLGS VFQRRLRSQE SQRYKNLIRE  360
HVDLKVVQSR LEKGAYNDCT HKFFRDLLLV FSNAVVFFRK TAPEHVAALE LRSLVLKEMN  420
DQLPRPRSAV STVKPKPNVE SDITTTTTSM RPSKSSSIVG TGRKKTEVER KVRVTRSSNG  480
RRGGRGQESG GRGKRGVGRP PKKTEMAAAG SGKRGRDNGE ADQGWESAAL GFGLSAPLSV  540
LYGVHLRSEN KKGIVRKVEV EEKEAKVKVN GKKVEDSAPV KVEDKGVRKR RSAQERRGER  600
RSRTTTTSNS KNVEAKIKHE SGGNEVSLRD GLEAPHMAAP PSRTFSSYSN CPWLSVGKWI  660
ICLGGLTSAT STLVWMEGSV HTLVAHRLKV RWMTASF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	293	RRRKRRR
2	288	294	RRRKRRR
3	289	293	RKRRR
4	588	618	RKRRSAQERRGERRSRTTTTSNSKNVEAKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	1e-25	MYB_related family protein