PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0020815.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 159aa    MW: 18614 Da    PI: 6.6276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0020815.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.11.5e-2271432128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLpk........kvkaeek.ewyfFskrdkkyatgkrk 74 
                                 +G+rFhPtd elv +yL+++v+  +   ++ i ++ d y   ePw +          ++k+ee+  + fF++++k +++ k+ 
  Rmu_sc0020815.1_g000004.1   7 LVGYRFHPTDLELVAYYLHNRVAMVDQFHSSLIFDFpDFYGQnEPWLIGDmfraqsnsTMKEEEEePLCFFTHHKKFNPKVKKF 90 
                                58*******************99988555467777779996549**99633667776644444442559*************** PP

                        NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 r++ sg+W+a  +++ v++ +++ +g+k+ + +  g++p+ ++  W+m+ y++
  Rmu_sc0020815.1_g000004.1  91 DRKVGSGTWSAEYSKNVVVADDDSYIGIKREFWYEGGSDPH-QNRAWLMQKYQI 143
                                **************9999999999********999888888.7999******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MASGAFLVGY RFHPTDLELV AYYLHNRVAM VDQFHSSLIF DFPDFYGQNE PWLIGDMFRA  60
QSNSTMKEEE EEPLCFFTHH KKFNPKVKKF DRKVGSGTWS AEYSKNVVVA DDDSYIGIKR  120
EFWYEGGSDP HQNRAWLMQK YQITSHSNDL VLCTLRKNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.19e-15NAC family protein