PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0020815.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 141aa    MW: 16069.3 Da    PI: 10.0841
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0020815.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.79.4e-2434118290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk.vkkekdgkwevtklele 84 
                                fYn+YAke+GFs+r ++s ++k+n++ +++++vC+k+g+++ e +k     r+r   ++gCka++  v+k+++g++ ++ +++ 
  Rmu_sc0020815.1_g000006.1  34 FYNRYAKEAGFSIRSHSSATNKDNTQLMRKEYVCYKQGTSKVEGEK-----RKRGLPKVGCKARIAaVRKKESGRYAISVFVEG 112
                                ***************************************9998877.....999***********7255666************ PP

                       FAR1  85 HnHela 90 
                                HnH+l+
  Rmu_sc0020815.1_g000006.1 113 HNHPLT 118
                                ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MESEDDHVYI PQVKAELMPI LHQEFETIDD VVAFYNRYAK EAGFSIRSHS SATNKDNTQL  60
MRKEYVCYKQ GTSKVEGEKR KRGLPKVGCK ARIAAVRKKE SGRYAISVFV EGHNHPLTSP  120
PRVHLLRSHS RVSKVNTVLS Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1 family protein