PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0020870.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18977.7 Da    PI: 5.1489
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0020870.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74e-15957149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+i+nk   + tf kRr+g++ KA EL++ ++a++avi fs+ +k +++
  Rmu_sc0020870.1_g000003.1  9 KKISNKNALKATFLKRRQGLFHKADELCTKTGAQIAVIAFSPGDKPFTF 57
                               689***************************************9998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MGIKKNEMKK ISNKNALKAT FLKRRQGLFH KADELCTKTG AQIAVIAFSP GDKPFTFGHP  60
SADSVIDQYY YPGKQVLEEN SSLGSVVIDE QDEKVKFWLD KPIEGMGLDE LKEFEWWVED  120
ELDETKMRRS CTKDLLGLNW IEDPKLDEMK IRESRTKDFL ANWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-24M-type_MADS family protein