PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0020870.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23367.6 Da    PI: 5.0069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0020870.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.23.8e-12953145
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               k+i +k   +vt+skRr+g++ KA   +  ++a++a+i fs+  k
  Rmu_sc0020870.1_g000004.1  9 KKITDKESLKVTYSKRRKGLFRKADDFCSKTGAQIAIITFSPGMK 53
                               679999999********************************9766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MGLKKIEIKK ITDKESLKVT YSKRRKGLFR KADDFCSKTG AQIAIITFSP GMKPMTFGQP  60
SAESIIDRYE LCEQSSNVDD KEILDKDGHH GDGEDLDLGA RQERIEEVGM NDEEKELLEV  120
EGVGLDELKQ YATRVEVQRN KLAWQIEERR RRESSTIDFL GVNCWSTSED LKLFGIKVGE  180
KMELEEIKRR ESCTKDFLSI VGIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-18M-type_MADS family protein