PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0020870.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20748.7 Da    PI: 5.9256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0020870.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.5e-13955147
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                               k+i +k   +vt+skRr+g++ KA E +  ++a++a+i fs+  k  
  Rmu_sc0020870.1_g000005.1  9 KKITDKNSLKVTYSKRRKGLFRKADEFCSKTGAQIAIITFSPGMKPM 55
                               678999999********************************976655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MGLKKIEIKK ITDKNSLKVT YSKRRKGLFR KADEFCSKTG AQIAIITFSP GMKPMTFGNP  60
SVESVINRYE LCEQSSNDKE ILDEDPDLHE VALSDEEKEM LEGMELNELK QHVSSVEEQR  120
NKLAWQIKDR KRRESSTIDL FGMNASVDLN LFGMKVGEKM EIEETKRRES CTKDFLSNFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134DRKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-23M-type_MADS family protein