PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0021084.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 409aa MW: 44978.2 Da PI: 8.2986

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0021084.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.7	8.4e-42	149	277	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaessss 80 a+kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl ++ +aik+l ++ +s+s+s++++ +++ Rmu_sc0021084.1_g000007.1 149 AVKKDRHSKIFTSQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLEWLLSNSTKAIKDLEKSkcnnsTSISSSSTSDCDDVL 232 78************************************************************54333111111112222332 PP TCP 81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134 ++ ++a ++++ k+aa +a+ srakarararertrekm+ ++ Rmu_sc0021084.1_g000007.1 233 DTN--------NEASdDKRRKMKEAA--AIMARASRAKARARARERTREKMCSTS 277 222........222213444444444..77888*****************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MSSVSEKATL KKNLEKYRKG EAKLALSSEP VIMCSSTNNN ISSSGTVFPF PPYNFPFSSS 60 SSSHNSHHPL LPQENTTCGG IFGLHHDQFS LLNNCLLSPG PESTMVNLGG ASSNAIVPSS 120 GGYQQHYGYG NNITHPYFVT EEVRVPVVAV KKDRHSKIFT SQGLRDRRVR LSINVAREFF 180 DLQDLLGFDK ASKTLEWLLS NSTKAIKDLE KSKCNNSTSI SSSSTSDCDD VLDTNNEASD 240 DKRRKMKEAA AIMARASRAK ARARARERTR EKMCSTSTRS PQICSQLSLF NELEHADMNK 300 EPGSTLLSNC QAEYHESVAL KRKLKAPSVS NYHDRSLQLN PKSTEPSSNC GSHINIQFPN 360 AISQNYWDIS GSVFTCPSIC AITTNMNLNS TADDQGGDIH DNTYKAVPC

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MSSVSEKATL KKNLEKYRKG EAKLALSSEP VIMCSSTNNN ISSSGTVFPF PPYNFPFSSS  60
SSSHNSHHPL LPQENTTCGG IFGLHHDQFS LLNNCLLSPG PESTMVNLGG ASSNAIVPSS  120
GGYQQHYGYG NNITHPYFVT EEVRVPVVAV KKDRHSKIFT SQGLRDRRVR LSINVAREFF  180
DLQDLLGFDK ASKTLEWLLS NSTKAIKDLE KSKCNNSTSI SSSSTSDCDD VLDTNNEASD  240
DKRRKMKEAA AIMARASRAK ARARARERTR EKMCSTSTRS PQICSQLSLF NELEHADMNK  300
EPGSTLLSNC QAEYHESVAL KRKLKAPSVS NYHDRSLQLN PKSTEPSSNC GSHINIQFPN  360
AISQNYWDIS GSVFTCPSIC AITTNMNLNS TADDQGGDIH DNTYKAVPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	6e-26	TCP family protein