PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0021209.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 147aa    MW: 17088.4 Da    PI: 8.9717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0021209.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.63.9e-13131406125
                        NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvka.....eekewyfFskrdkkyatgkrknr..atk 79 
                                 Fh td++lv  yL +++++ +   +++++e++iy +    Pwd+ + +++     +++ +yfFs+ +k    g+r +r    +
  Rmu_sc0021209.1_g000001.1  13 TFHRTDSDLVGSYLYNRIKSPTPIGKQTFPEIEIYGTtglPPWDIWR-IYEpskfpHQDYIYFFSRVKKL---GSRCSRriGCD 92 
                                59******************996555678888887654448****63.2222223344466888877664...44555523467 PP

                        NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykg.rapkgektdWvmhe 125
                                 g+W++t   k+++++  +e  g  + + + ++ ++   ++++W+m++
  Rmu_sc0021209.1_g000001.1  93 GGTWRKTEAAKPIYVSgIEEPYGKLRKFRYENNkDKAFEHHATWLMDD 140
                                9**************8545668888999998652444457899**985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MSLEDLDVGV VKTFHRTDSD LVGSYLYNRI KSPTPIGKQT FPEIEIYGTT GLPPWDIWRI  60
YEPSKFPHQD YIYFFSRVKK LGSRCSRRIG CDGGTWRKTE AAKPIYVSGI EEPYGKLRKF  120
RYENNKDKAF EHHATWLMDD DTLKASA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.13e-06NAC family protein