PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0021698.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 609aa MW: 68974.1 Da PI: 4.6977

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0021698.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	294	314	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ Rmu_sc0021698.1_g000001.1 294 YCVVCGKKFKSEKQWKNHEQS 314 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV 60 LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA 120 DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD 180 QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER 240 ERKKKEEREK KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDVEEEERKR NELYCVVCGK 300 KFKSEKQWKN HEQSKKHKDK IAEFRESIGD EELDEEEVDD LGDQMREGLE IGEEDDGAGV 360 SAGDDEFYDF GDEILTEKLD DDDEDDNGGG GDDDDEMELL QAMAARHKSR EKLDGDGDGD 420 GDDDGEMELL KAMAARQKSR ENVGEAVGVD DGDSGSEDEM DVLEALVAGR KSRKNAASRV 480 EVEDPLVTGV HVDNDSNGVE SIPMDYENRK PTRRKGKSKK SGGETKRVDM NEISNGQSEA 540 ASENDNSDVK ESTSDSMVEN ASTNEKQDYQ IARKKKSSKQ TVEKKKENVK KEANGKSKSS 600 SKGKKAKVR

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA  120
DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD  180
QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER  240
ERKKKEEREK KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDVEEEERKR NELYCVVCGK  300
KFKSEKQWKN HEQSKKHKDK IAEFRESIGD EELDEEEVDD LGDQMREGLE IGEEDDGAGV  360
SAGDDEFYDF GDEILTEKLD DDDEDDNGGG GDDDDEMELL QAMAARHKSR EKLDGDGDGD  420
GDDDGEMELL KAMAARQKSR ENVGEAVGVD DGDSGSEDEM DVLEALVAGR KSRKNAASRV  480
EVEDPLVTGV HVDNDSNGVE SIPMDYENRK PTRRKGKSKK SGGETKRVDM NEISNGQSEA  540
ASENDNSDVK ESTSDSMVEN ASTNEKQDYQ IARKKKSSKQ TVEKKKENVK KEANGKSKSS  600
SKGKKAKVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK
2	201	209	KKQRKKAKR
3	223	245	KKRDKRVMDMMVKREEERERKKK
4	247	253	EREKKKK
5	573	610	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-147	C2H2 family protein