PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0021911.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 601aa MW: 66940.4 Da PI: 7.1634

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0021911.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	311	333	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Rmu_sc0021911.1_g000011.1 311 RLCFKFVSSGSCPRGETCNFQHD 333 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MAPPKILLCG DVSGNLKQLF KRVVSVNKSA GPFDALFCVG QFFPDSADQL DEFTGYIEGR 60 AEIPLPTYFI GDYGVGATKF LLAATKDSGN QGFKMDGLKV CSNLYWLKGS GKFTFHGLSV 120 VYLSGLQSSD SQQFGTYSQD DVDALRAIAE DPGIVDLFLT YPCFVISTSD VPPGASEPFG 180 TDSTVAELAA EIKPRYHVAG TKGIFYAREP YSNVDAVHVT RFIGLAPVGN KDKQKFLHAL 240 SPTPASTMSA LEIKTKSPNT TLSPYMYIEG TANAKEGAKR SSDSVSDSDS QYWRYDVSQK 300 RQKHGAGDGN RLCFKFVSSG SCPRGETCNF QHDMDAREQS LRGVCFDFMN KGKCERGTDC 360 KFKHSLQDEG ESNSHKRRTG NATRSTECWF CLSSSKIESH LFISLGEHYY CALAKGPLVE 420 DHVLLIPIGH SPNTLSLPSE CEMELGKFQD SLKKFYKKQD KEVVFFEWAS KRSTHANLQV 480 VPIPSAKAAS VQNLFHLAAD RFQFKFTTTK FSNSSDGRKS LRTQFDRNFS FFYAELPDGT 540 VLSHLIEESE NFLPQFGREV MAGLLNKANR ADWRRCTDSK EEETKMVEKF KSRFEEFDPN 600 N

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MAPPKILLCG DVSGNLKQLF KRVVSVNKSA GPFDALFCVG QFFPDSADQL DEFTGYIEGR  60
AEIPLPTYFI GDYGVGATKF LLAATKDSGN QGFKMDGLKV CSNLYWLKGS GKFTFHGLSV  120
VYLSGLQSSD SQQFGTYSQD DVDALRAIAE DPGIVDLFLT YPCFVISTSD VPPGASEPFG  180
TDSTVAELAA EIKPRYHVAG TKGIFYAREP YSNVDAVHVT RFIGLAPVGN KDKQKFLHAL  240
SPTPASTMSA LEIKTKSPNT TLSPYMYIEG TANAKEGAKR SSDSVSDSDS QYWRYDVSQK  300
RQKHGAGDGN RLCFKFVSSG SCPRGETCNF QHDMDAREQS LRGVCFDFMN KGKCERGTDC  360
KFKHSLQDEG ESNSHKRRTG NATRSTECWF CLSSSKIESH LFISLGEHYY CALAKGPLVE  420
DHVLLIPIGH SPNTLSLPSE CEMELGKFQD SLKKFYKKQD KEVVFFEWAS KRSTHANLQV  480
VPIPSAKAAS VQNLFHLAAD RFQFKFTTTK FSNSSDGRKS LRTQFDRNFS FFYAELPDGT  540
VLSHLIEESE NFLPQFGREV MAGLLNKANR ADWRRCTDSK EEETKMVEKF KSRFEEFDPN  600
N