PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0022203.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 360aa MW: 40060 Da PI: 7.34

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0022203.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.4	1.3e-18	20	108	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 kv+ ps+v+ +l+lpkkf+ +h + +++++++ledesgr+++ k+ ++ + l++GW++F a++L +gD+vvF+++ Rmu_sc0022203.1_g000003.1 20 KVMRPSNVTGCFCLSLPKKFCGDHL-P-KQDTMIVLEDESGREFQTKY--LVGKAG--LSAGWRGFSIAHKLLAGDVVVFQRVT 97 8999***************9995.3.37789***********..555444..9********************766 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 s+f +v ++r+ Rmu_sc0022203.1_g000003.1 98 PSKF--KVYIVRS 108 5666..8888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDRAKKLEAN LAPEFPRVAK VMRPSNVTGC FCLSLPKKFC GDHLPKQDTM IVLEDESGRE 60 FQTKYLVGKA GLSAGWRGFS IAHKLLAGDV VVFQRVTPSK FKVYIVRSSG LDVADCALGL 120 VKLDAGIRQM DTANFTARET AKVSIPREPI QKKNTIACNT SLAQMSDRSG NDGEDFGSEV 180 LDGIRLAESV IPFKEVKGME NFDVIINGLV LNSEFSKYHL TKYYELCCSQ SSFLHKNILE 240 GLNFKLVAGI ISETINISDA IRACKITTSE CDFLTWDKTL QASETLGMNV GFLRTRLNKL 300 ASLASESKRY SNLEGGRAEA EVKLLGEKEN TTWFDSEIET HNLLFERLKA MFEEVARAPW

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDRAKKLEAN LAPEFPRVAK VMRPSNVTGC FCLSLPKKFC GDHLPKQDTM IVLEDESGRE  60
FQTKYLVGKA GLSAGWRGFS IAHKLLAGDV VVFQRVTPSK FKVYIVRSSG LDVADCALGL  120
VKLDAGIRQM DTANFTARET AKVSIPREPI QKKNTIACNT SLAQMSDRSG NDGEDFGSEV  180
LDGIRLAESV IPFKEVKGME NFDVIINGLV LNSEFSKYHL TKYYELCCSQ SSFLHKNILE  240
GLNFKLVAGI ISETINISDA IRACKITTSE CDFLTWDKTL QASETLGMNV GFLRTRLNKL  300
ASLASESKRY SNLEGGRAEA EVKLLGEKEN TTWFDSEIET HNLLFERLKA MFEEVARAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-31	B3 family protein