PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0022525.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 241aa    MW: 27447.5 Da    PI: 10.3326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0022525.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16127212194
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+k +++s+v+   +l lp +f++++  + +++  ++l de+g+++   +   +++++  l++GW++F  a++L +gD +vF+l
  Rmu_sc0022525.1_g000001.1 127 FVKPMLQSHVTGGFWLGLPLPFCRKYL-P-KRDAAVMLVDEEGEEYPTVY--LGNKNG--LSGGWRGFSIAHELVDGDALVFQL 204
                                89************************5.3.36679***************..666666..9*********************** PP

                                -SSSEE..EE CS
                         B3  85 dgrsefelvv 94 
                                ++ ++f  +v
  Rmu_sc0022525.1_g000001.1 205 IRPTTF--KV 212
                                986666..55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MAKPKTSYEE TRKQRMEENR KRMEALNLPQ LAQAFQTSSS PKPSPMKRQK PRQVEKQIVE  60
VRRSARVARQ PTPVYREVEV KVPRSYGRIS KHRDLSNRVY ASEYARAEAT EKAEELESGL  120
GSDYPTFVKP MLQSHVTGGF WLGLPLPFCR KYLPKRDAAV MLVDEEGEEY PTVYLGNKNG  180
LSGGWRGFSI AHELVDGDAL VFQLIRPTTF KVSGLRLLNS VLSTQGIHEK LLKPQNRGLV  240
Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-73B3 family protein