PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0023733.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 429aa MW: 49043 Da PI: 6.0981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0023733.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	164	187	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +L++H + H Rmu_sc0023733.1_g000001.1 164 YICGVCGRKCKSNLDLTKHFKQlH 187 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MVNPIICNPI HTTLPYNKPL PFPFLNSSQS PFFNSQINLT LNPKPPSSIS FNKRRWRRNY 60 TTVTSAASSE IDMVRNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQHFGEV 120 VDVSAYANRH AFIHLPNWVV EQRRERKQLD ILERKGIVTP PQPYICGVCG RKCKSNLDLT 180 KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFISGNHKY NEAASTLIKP KVGYGLAAEL 240 RRAGVFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSDMLR KARESSLGTV 300 VVGDWDRALG RHADVWVPWT GVEKGEISEK DLVPRRRRSE FSDEDEEEED GDVSLFSDLG 360 FGGGSELDNV VDDLVGLRSQ GSGGMRISAF SEGEVEEGDW EEDYEESEDG DYLLEDSEDE 420 DSEDEDGFF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MVNPIICNPI HTTLPYNKPL PFPFLNSSQS PFFNSQINLT LNPKPPSSIS FNKRRWRRNY  60
TTVTSAASSE IDMVRNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQHFGEV  120
VDVSAYANRH AFIHLPNWVV EQRRERKQLD ILERKGIVTP PQPYICGVCG RKCKSNLDLT  180
KHFKQLHERE RQKKLNRMRS LKGKKRQRFK ERFISGNHKY NEAASTLIKP KVGYGLAAEL  240
RRAGVFVKTV EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSDMLR KARESSLGTV  300
VVGDWDRALG RHADVWVPWT GVEKGEISEK DLVPRRRRSE FSDEDEEEED GDVSLFSDLG  360
FGGGSELDNV VDDLVGLRSQ GSGGMRISAF SEGEVEEGDW EEDYEESEDG DYLLEDSEDE  420
DSEDEDGFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-167	C2H2 family protein