PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0024560.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 292aa    MW: 32800.8 Da    PI: 9.4279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0024560.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.27e-32461971128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.........vikev.diykvePwdLpkkvkaeekewyfFskrdk 66 
                                lp+G++F+Ptd+e++ ++L+ kv +++        +   +         +i+   +i++++P++Lp  v+++    +fF++ +k
  Rmu_sc0024560.1_g000002.1  46 LPAGVKFDPTDQEVL-QHLEGKVWSSTdiaagnklH---HhplidqfipTIEGEnGICYTHPHKLP-GVSKDGLVRHFFHRPSK 124
                                799**********99.99****99988766665540...15556665544666657**********.555666688******** PP

                        NAM  67 kyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +y+tg+rk+r+            + +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Rmu_sc0024560.1_g000002.1 125 AYTTGSRKRRKvhtdrdssgeGGETRWHKTGKTRPVFV-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 197
                                **********7566666655433778************.9*************6657999999*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MTHCNDLGQE DQTIIAKDGL TTRTCPSCGY QIKYQQQAGI QNLPGLPAGV KFDPTDQEVL  60
QHLEGKVWSS TDIAAGNKLH HHPLIDQFIP TIEGENGICY THPHKLPGVS KDGLVRHFFH  120
RPSKAYTTGS RKRRKVHTDR DSSGEGGETR WHKTGKTRPV FVGGKVKGYK KILVLYTNYG  180
KQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGNSGMKDL INNNSAKLMK  240
GQSGHNEALV QYCNNANSFI SFDQNGQDRS SSNPQIIPHH FPLHDGSFVS LK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-107NAC family protein