PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0024845.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 430aa MW: 47393.3 Da PI: 8.4687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0024845.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	245	289	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ L++llP+ +K +Ka++L+ A +Y+ sL Rmu_sc0024845.1_g000001.1 245 HMISERKRREKLNESFHSLKSLLPPG-----TKKDKASVLTTARDYLTSL 289 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGCKSGEIEL GFSNVSQMNV KKELIMRSWM LPEAFCRSQL SPHTVEVVST RAYTEQQNQL 60 SSSSSSLRSH STMDSPEYSS LLFNTLQTST APTSLNIPAD QVYNTTNFTS SLQPIVSPNT 120 NIFSSTSSST NPHQQPMQAF SRIRGNIQLP APEIEDAEIT RAILAVLTTP SPSSSPSISS 180 HQSVPPALKD DPAPSPSHLK PKPSSAFKNY NYISSPLAPR TQTKGAANLA GMQAATRPTT 240 SQLHHMISER KRREKLNESF HSLKSLLPPG TKKDKASVLT TARDYLTSLK AQVDELSKRN 300 QQLEAAARLV AKEDQEEETA GSSSTERVTV TLTHVSGSST DQDQQIIALQ VIVRSGECST 360 EDMVIRILEF LKQVKNLSLM SMKASTWKTE LHPNINRVVL RLRVDDQANE WDESAFQEAV 420 RRVVADLAQR

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGCKSGEIEL GFSNVSQMNV KKELIMRSWM LPEAFCRSQL SPHTVEVVST RAYTEQQNQL  60
SSSSSSLRSH STMDSPEYSS LLFNTLQTST APTSLNIPAD QVYNTTNFTS SLQPIVSPNT  120
NIFSSTSSST NPHQQPMQAF SRIRGNIQLP APEIEDAEIT RAILAVLTTP SPSSSPSISS  180
HQSVPPALKD DPAPSPSHLK PKPSSAFKNY NYISSPLAPR TQTKGAANLA GMQAATRPTT  240
SQLHHMISER KRREKLNESF HSLKSLLPPG TKKDKASVLT TARDYLTSLK AQVDELSKRN  300
QQLEAAARLV AKEDQEEETA GSSSTERVTV TLTHVSGSST DQDQQIIALQ VIVRSGECST  360
EDMVIRILEF LKQVKNLSLM SMKASTWKTE LHPNINRVVL RLRVDDQANE WDESAFQEAV  420
RRVVADLAQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	254	ERKRRE
2	250	255	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	7e-49	bHLH family protein