PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0025164.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 514aa MW: 57392 Da PI: 10.258

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0025164.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.5	3.7e-09	11	44	2	36
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 ++W t E++llv av+++G+++W+++a+++ R+ Rmu_sc0025164.1_g000001.1 11 QPWGTLEELLLVSAVNRHGTKRWDSVAKEVK-SRS 44 79****************************9.887 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK 60 FDDLKRRFVV SRQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK 120 KMEEDRDRSL KAERPAPVKD LHGDGGGGEQ SELPEKLAGK PNSGRDFVSD SSERENRSFN 180 ESNSTSQRSE AKANGVVEKK RDADAEPGPE RNQPDPVQTE TRSEPASANG KVIDDDVDDK 240 NDRQGGGGAE PTTTGRPGES NELSGSKRVV VKEVRKQNSD ESQRYKNLIR EHVDLKVVQS 300 RLEKGAYNDC THKFFRDLLL VFSNAVVFFR KTAPEHVAAL ELRSLVLKEM NDQLPRPRSA 360 VSTVKPKPNV ESDITTTTTS MRPSKSSSIV VCGKRGSINA LSENKKGIVR KVEVEEKEAK 420 VKVNGKKVED SAPVKVEDKG VRKRRSAQER RGERRSRTTT TSNSKNVEAK TKHESGGNEV 480 SMRDGLEAVK TEKKEDVKKK QGAASFLKRM KQNG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MASREHETSA QPWGTLEELL LVSAVNRHGT KRWDSVAKEV KSRSSTTTTA VFTAQNCRDK  60
FDDLKRRFVV SRQNDAESRS GDDDGLAFMV DELRRLRVEE LRREVRRRDV SIVSLELKVK  120
KMEEDRDRSL KAERPAPVKD LHGDGGGGEQ SELPEKLAGK PNSGRDFVSD SSERENRSFN  180
ESNSTSQRSE AKANGVVEKK RDADAEPGPE RNQPDPVQTE TRSEPASANG KVIDDDVDDK  240
NDRQGGGGAE PTTTGRPGES NELSGSKRVV VKEVRKQNSD ESQRYKNLIR EHVDLKVVQS  300
RLEKGAYNDC THKFFRDLLL VFSNAVVFFR KTAPEHVAAL ELRSLVLKEM NDQLPRPRSA  360
VSTVKPKPNV ESDITTTTTS MRPSKSSSIV VCGKRGSINA LSENKKGIVR KVEVEEKEAK  420
VKVNGKKVED SAPVKVEDKG VRKRRSAQER RGERRSRTTT TSNSKNVEAK TKHESGGNEV  480
SMRDGLEAVK TEKKEDVKKK QGAASFLKRM KQNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	442	472	RKRRSAQERRGERRSRTTTTSNSKNVEAKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-19	MYB_related family protein