PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0027086.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 200aa MW: 22855 Da PI: 8.9452

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0027086.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.7e-18	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd+ll ++++++G g W++I++ g++R++k+c++rw++yl Rmu_sc0027086.1_g000003.1 5 PWTKEEDQLLRKCIEKYGEGKWHRIPHLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP
2	Myb_DNA-binding	47.6	3.9e-15	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE el++++ ++lG++ W+++a++++ gRt++++k++w+ + Rmu_sc0027086.1_g000003.1 56 RGSFEQEEVELIIQLQRLLGNR-WSLVAARLP-GRTGNDVKNYWNCH 100 899*****************.*****.*********977 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MGGIPWTKEE DQLLRKCIEK YGEGKWHRIP HLAGLNRCRK SCRLRWLNYL RPNIKRGSFE 60 QEEVELIIQL QRLLGNRWSL VAARLPGRTG NDVKNYWNCH LSKKLNAQET HGDHQKINHA 120 GNNNLQVIRP QASKYASSNS KRSMISSTLE DQTCQALEEC SNASVAMLCN IDKDQGQISQ 180 IVEREDSNNP ICSVFVLVSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66380.1	2e-47	MYB family protein