PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0027411.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 490aa MW: 54500.8 Da PI: 8.5389

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0027411.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	95	113	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cgk F ++ L H++ Rmu_sc0027411.1_g000002.1 95 CRECGKGFQSWKALIAHMK 113 9*****************7 PP
2	zf-C2H2	12.2	0.00055	317	339	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Rmu_sc0027411.1_g000002.1 317 YECGTCNKVFRSYQALGGHRASH 339 99**********99999998887 PP
3	zf-C2H2	12.5	0.00044	399	421	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Rmu_sc0027411.1_g000002.1 399 HSCPICLKVFPTGQALGGHKRSH 421 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLIDNNSTED QKFINSRVKV SPLSNYTETG 60 FETGPQAGYG LRENPKKTWR IAGSSEETSV DNKLCRECGK GFQSWKALIA HMKCHSNSTT 120 NSFENEQDSW TSSKAMDSQS ENETTNTTRR RTTKSRRRRT RYMATTTTTS SSNFSIVNNN 180 ASSSVTEIEQ EQQEEVAWCL MMLSRDVGHW GGLKIFADLD HSISDNNSGF SDAPSSLKMN 240 RVSEIKEATL ETFKLKKKML DEEVSVGGFS KSDKTKKNLI LKKTELAEAQ LGSNKFNSSN 300 KRKLQDAYDH SSKRSKYECG TCNKVFRSYQ ALGGHRASHK KIKGCFASKI ESSEHTTEFD 360 TDLSPDHPIA SDHSKLSNVI DHQDDVVKVE SISTKSKGHS CPICLKVFPT GQALGGHKRS 420 HLIGGSADSK SSQSTIVIPK PATPEVREFL DLNLPAPVEE EISTSHAAAA QAFKPWWVGT 480 SHKPYEALVS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEEDQEFKHF CKLCSKSFPC GRSLGGHMRS HLIDNNSTED QKFINSRVKV SPLSNYTETG  60
FETGPQAGYG LRENPKKTWR IAGSSEETSV DNKLCRECGK GFQSWKALIA HMKCHSNSTT  120
NSFENEQDSW TSSKAMDSQS ENETTNTTRR RTTKSRRRRT RYMATTTTTS SSNFSIVNNN  180
ASSSVTEIEQ EQQEEVAWCL MMLSRDVGHW GGLKIFADLD HSISDNNSGF SDAPSSLKMN  240
RVSEIKEATL ETFKLKKKML DEEVSVGGFS KSDKTKKNLI LKKTELAEAQ LGSNKFNSSN  300
KRKLQDAYDH SSKRSKYECG TCNKVFRSYQ ALGGHRASHK KIKGCFASKI ESSEHTTEFD  360
TDLSPDHPIA SDHSKLSNVI DHQDDVVKVE SISTKSKGHS CPICLKVFPT GQALGGHKRS  420
HLIGGSADSK SSQSTIVIPK PATPEVREFL DLNLPAPVEE EISTSHAAAA QAFKPWWVGT  480
SHKPYEALVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	4e-44	C2H2 family protein