PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0028309.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 90aa    MW: 10313.3 Da    PI: 4.8259
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0028309.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind70.33.9e-222490260
                               HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
               HSF_DNA-bind  2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                               Fl+k+y++le+e          ++++sw+ +gn f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+Y
  Rmu_sc0028309.1_g000001.1 24 FLSKTYDLLEEEeeedkdgsGKRSIVSWNGEGNGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTY 90
                               9*********66666667768999******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MDQHISEVNH GTGQSSRTRS PAPFLSKTYD LLEEEEEEDK DGSGKRSIVS WNGEGNGFIV  60
WSPAEFSELL LPKYFKHNNF SSFIRQLNTY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-25HSF family protein