PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0029003.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LSD
Protein Properties Length: 128aa    MW: 13462.6 Da    PI: 8.5815
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0029003.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.23.1e-14832125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               CggCrtlL+ +rGA+sVRC++C+tV
  Rmu_sc0029003.1_g000001.1  8 CGGCRTLLMHTRGATSVRCSCCHTV 32
                               ************************9 PP
2zf-LSD1521.2e-164670125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               Cg+Crt+L+YP+GApsV+Ca+C++V
  Rmu_sc0029003.1_g000001.1 46 CGNCRTTLMYPYGAPSVKCAVCQFV 70
                               ***********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
TEMAQLICGG CRTLLMHTRG ATSVRCSCCH TVNLAPAANQ CAHINCGNCR TTLMYPYGAP  60
SVKCAVCQFV TNVGMGNVRV PIPVHRPSTS ASMPHSQSQT VVVENPMSVD ESGKLVSNVV  120
VGVTTGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.23e-58LSD family protein