PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0033761.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 165aa    MW: 18471.2 Da    PI: 10.7066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0033761.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC29.51.6e-0984133756
                      NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfil 56 
                                e+++e+++d+k  ++P+ r+k+i++a++   +is++a  l+ ka e f+ 
  Rmu_sc0033761.1_g000002.1  84 EEEVEEKEDVKSYTFPMERVKRIIRAEDSDLRISSDAVFLVNKATEKFLE 133
                                5789**********************999999**************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MATPKKGTPP KKTKEAQKPS TKTSKNDGNK IKKKTSNGTA AAAAAVRSPS SKPQKSREQN  60
GGKSTKTPTP KSKKPQQNGK RVREEEVEEK EDVKSYTFPM ERVKRIIRAE DSDLRISSDA  120
VFLVNKATEK FLEKFSEDAH KCCVKDRKKA LAYKHLCKFC SQFPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-21NF-YC family protein