PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0033846.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 273aa    MW: 30983.7 Da    PI: 10.2029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0033846.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.55.1e-1310723399
                               -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                 tltl ++   sW+v+    k ++ ++l++GW+eF ++n L + +f++F +dg++ f   v +f+k
  Rmu_sc0033846.1_g000001.1 10 RATLTLSSSADSSWNVRA--HKIGRDIYLKEGWQEFLRDNSLGDSEFLMFGYDGNMHF--SVDIFEK 72
                               4589999***********..99999*****************************9999..9999987 PP
2B345.71.1e-141932711698
                                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                + lp  f+++h ++++   + +le+++g +Wev+     + ++++l+ GW +F++ ng++ gD ++F+l++ +++  v+k+++
  Rmu_sc0033846.1_g000001.1 193 VDLPTGFCRKH-LVPPDYYKFILENTEGDRWEVNG--VPSNNTIMLSCGWVSFARGNGVEIGDDCLFELQS-KSKMVVHKIRQ 271
                                569********.56678899***************..999999*************************976.44434555544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
KHILNELSIR ATLTLSSSAD SSWNVRAHKI GRDIYLKEGW QEFLRDNSLG DSEFLMFGYD  60
GNMHFSVDIF EKNCCKRTKA PALRRHQQST FTNNTKRPRG RPRKRGDAAE HTLNGESSNS  120
TKRPRGRPRK SGDAAEHTLN GESRNSTKRP RGRPRKSGDA AEHTPNGESS IPIEYTESRF  180
PAFIRTINKV YGVDLPTGFC RKHLVPPDYY KFILENTEGD RWEVNGVPSN NTIMLSCGWV  240
SFARGNGVEI GDDCLFELQS KSKMVVHKIR QNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104KRPRGRPRK
2122130KRPRGRPRK
3148156KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.12e-15B3 family protein