PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0034215.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 334aa    MW: 37227.1 Da    PI: 7.3678
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0034215.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444.1e-14481381199
                                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvlt...kGWkeFvkangLkegDfvvFkldgrsef 90 
                                 ++g   + ++fa+eh   + +s ++tl+ +  r+W+  ++ + ++++ ++ +   +GWk F ++n+L  g ++vF+l+++++f
  Rmu_sc0034215.1_g000004.1  48 IQLGFAHINRSFAKEHLCRPGTSCDVTLQISGERVWTAVCTATEHRDQkIYTRfsgAGWKAFQQDNHLVKGNICVFELIEERTF 131
                                556667899*******666778889***************9977776653333555**********************987777 PP

                                ..EEEEE-S CS
                         B3  91 elvvkvfrk 99 
                                  +v++fr+
  Rmu_sc0034215.1_g000004.1 132 --KVSIFRT 138
                                ..****997 PP
2B3474.7e-15219313698
                                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                                +++ ++++++  ++ +fa+eh  k+  s  ++l++++ r+W+ ++ ++ +s++     + + GWk F ++n+L  gD++vF+l+
  Rmu_sc0034215.1_g000004.1 219 MTAAYMRLSLAHISASFAAEHLCKPGISCNVILQNSEERVWTAQCFVSEHSDHrvqaSLSGPGWKAFKQDNHLVLGDVCVFELI 302
                                5666677778899********777889999***************88666655555577779********************99 PP

                                SSSEE..EEEEE- CS
                         B3  86 grsefelvvkvfr 98 
                                +  e++l+v++f+
  Rmu_sc0034215.1_g000004.1 303 D--ERKLKVSIFQ 313
                                7..5667999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MPPAHLETRA ASISSGSSAD EHQNDLTATA SFKSNKPFFM LNICASYIQL GFAHINRSFA  60
KEHLCRPGTS CDVTLQISGE RVWTAVCTAT EHRDQKIYTR FSGAGWKAFQ QDNHLVKGNI  120
CVFELIEERT FKVSIFRTKV KINRQAEEKD MEIDYPIHGG GIDVTPKGKK PGANQDVPPA  180
HLEARANSVS SGSSADEDQN NLLTTTSFKS DKPIFMLNMT AAYMRLSLAH ISASFAAEHL  240
CKPGISCNVI LQNSEERVWT AQCFVSEHSD HRVQASLSGP GWKAFKQDNH LVLGDVCVFE  300
LIDERKLKVS IFQGKVKIIR QNEENEARHI SQFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-12B3 family protein