PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0035632.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 187aa    MW: 21135.9 Da    PI: 7.9897
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0035632.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40101091100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCaaCk++rr+C+kdC lap+fpa+qpk f+n+h+l+G+sn++k+lk++++e++e+am+s++ye+++ra+ Pv G++g+i++l+
  Rmu_sc0035632.1_g000001.1  10 ACAACKYQRRRCTKDCDLAPHFPADQPKMFQNAHRLYGVSNIMKILKQTHPEQKEEAMRSIIYESNMRAKFPVTGCMGIINQLT 93 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                 ql+q+  el +++++
  Rmu_sc0035632.1_g000001.1  94 FQLQQAFDELRYVRSH 109
                                *********9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MTIKGGTSQA CAACKYQRRR CTKDCDLAPH FPADQPKMFQ NAHRLYGVSN IMKILKQTHP  60
EQKEEAMRSI IYESNMRAKF PVTGCMGIIN QLTFQLQQAF DELRYVRSHL AICRDQCQYQ  120
YNSPSCPSSQ LQLGIQTNDH EALQLYQQQY QYHQYNSAAG SSAGGGGMSL MANEYLANGI  180
NGVYIDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.15e-44LBD family protein