PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0036999.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 257aa    MW: 29652 Da    PI: 9.8095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0036999.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-1610102199
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                ffk+   +  ++++ l++p kf +++  +++  e+ tl l+  s  sW+v++  ++  + +++++GW++F k+n L + +f+vF
  Rmu_sc0036999.1_g000001.1  10 FFKII--KTGFNTDDLRIPPKFRRHMlnELS--ETATLELKGYSKGSWTVQV--SQIESDIYFKNGWQKFIKDNSLGDFEFLVF 87 
                                67777..77889999*******866665444..6679999************..888889************************ PP

                                EE-SSSEE..EEEEE-S CS
                         B3  83 kldgrsefelvvkvfrk 99 
                                ++++ + f  ++ +f+k
  Rmu_sc0036999.1_g000001.1  88 RYERPMHF--TIEIFDK 102
                                **988999..9999987 PP
2B347.72.8e-151792551597
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                ++ +p +f +eh   +++   ++l++++g++W+vk+    +++++ l++GW eF +an+++ gD+++F l+g  ++++vv+v+
  Rmu_sc0036999.1_g000001.1 179 NVAVPVDFSREHL--PQGYYNIVLKNLKGQKWKVKV--VCSGKTVKLSAGWVEFRRANQINCGDICTFDLVG--RRTMVVHVI 255
                                5789999*99994..235678***************..77777799***********************998..455688886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEGASKEPTF FKIIKTGFNT DDLRIPPKFR RHMLNELSET ATLELKGYSK GSWTVQVSQI  60
ESDIYFKNGW QKFIKDNSLG DFEFLVFRYE RPMHFTIEIF DKTACKRNNL LEKSTRADNT  120
KRPRGRPRKC NRSAAGENIQ SCQSFELKEI KEEEEEEAAT LPSSGFRSFT SIMGKHCYNV  180
AVPVDFSREH LPQGYYNIVL KNLKGQKWKV KVVCSGKTVK LSAGWVEFRR ANQINCGDIC  240
TFDLVGRRTM VVHVIPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-16B3 family protein