PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0038073.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CO-like
Protein Properties Length: 396aa    MW: 43586.3 Da    PI: 5.2747
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0038073.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.43e-081858438
                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                               r+C+++ + + + +C+ ++ +lC dC  ++H        H+
  Rmu_sc0038073.1_g000001.1 18 RVCDTCRSAPCTVYCRADSAYLCSDCDATIHAAnrvasrHE 58
                               79*****************************5556666676 PP
2zf-B_box29.51.6e-0960105342
                   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                 ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  Rmu_sc0038073.1_g000001.1  60 VWVCEACERAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 105
                                689*****************************66899999**9997 PP
3CCT70.35e-24327370144
                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Rmu_sc0038073.1_g000001.1 327 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 370
                                9*****************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MLLKEESNGA AAANSWARVC DTCRSAPCTV YCRADSAYLC SDCDATIHAA NRVASRHERV  60
WVCEACERAP AAFLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG FLHGPTATDP  120
GGQIMVGAAP ADTTEDGFLS QEGDEAMDEE DEDEAASWLL LNPVKNSNGN HNSNNNPNNN  180
NNGFFFGVEV DEYLDFVEYN SSDQNQLSTT TASTDQHNQY GVPHKISYGG DSVVPVQYGE  240
GKVNQMQMQQ KHNFHQLGME YESSKAAYGY DGSISHTVSV SSMDVGVVPD STMSDMSISH  300
PRTPKGTIDL FNGPTIQMPT QLSPMDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP  360
RIKGRFAKRT DIEVEVDQMF STSLMGETGY GIVPSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-126CO-like family protein