PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0038193.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 197aa    MW: 23433.6 Da    PI: 9.8966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0038193.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.8e-3381601128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvka..eekew 58 
                                +ppG+r++Ptdeel+++ L+k+ +gk+ ++ ++i+e++++k+eP++Lp+                        +  +  ++ +w
  Rmu_sc0038193.1_g000002.1   8 VPPGYRYRPTDEELLSD-LEKQNQGKDSQIMSIIPEIEVCKHEPRELPElafrrqqnlgrklffffffwftraE--SwySQGKW 88 
                                69*************66.9***********99****************66899999999999999999887442..2435669* PP

                        NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                                yfF++r+ ky++++r+nr+t +g Wk t kd+++++  +++++g k+tL+fy k    k++kt Wv+hey l
  Rmu_sc0038193.1_g000002.1  89 YFFAPREYKYPKSNRSNRTTGEGSWKVTSKDRDIKAPgTKAVIGRKRTLTFYiKRGVLKPQKTGWVIHEYYL 160
                                ************************************9667779*********544556889*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MSWGLFRVPP GYRYRPTDEE LLSDLEKQNQ GKDSQIMSII PEIEVCKHEP RELPELAFRR  60
QQNLGRKLFF FFFFWFTRAE SWYSQGKWYF FAPREYKYPK SNRSNRTTGE GSWKVTSKDR  120
DIKAPGTKAV IGRKRTLTFY IKRGVLKPQK TGWVIHEYYL TRANSDEQIG DFVVCCLKYK  180
SDNSDHHEDA PFLYRGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.13e-29NAC family protein