PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0038216.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22593 Da    PI: 9.6122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0038216.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.17.2e-161150342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n+s r  tf kR++g+lKK  E+ +LCd+++avii+s+
  Rmu_sc0038216.1_g000002.1 11 IANESSRPMTFRKRKKGLLKKEGEITTLCDIKAAVIIYSP 50
                               89************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MARRKVRLHC IANESSRPMT FRKRKKGLLK KEGEITTLCD IKAAVIIYSP FDSESEVFPR  60
HLEVHELLTK FRDMPQMEKT RMMVDQETFL RQNRQSPGAN QKEKRDNREK EITQVMFSCL  120
KGRTLSDLNM MDLDDLKFII ERNFRELGIK QRVADEQKQE ENQENQLNQV EAAVELGLMT  180
RSAFGEGTNR GVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVRLHCIANESSRPMTFRKRK
22226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-27M-type_MADS family protein