PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0040875.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 142aa    MW: 16512 Da    PI: 9.7543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0040875.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-115781126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               ykt+lC++f r G C yG+ C +aHg
  Rmu_sc0040875.1_g000001.1 57 YKTRLCNNFKR-GRCLYGEACLYAHG 81
                               9**********.*************8 PP
2zf-CCCH23.59.7e-08114136426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                +lC+ f+  G C yG++C+F H+
  Rmu_sc0040875.1_g000001.1 114 RLCKLFLNEGKCTYGEKCRFRHV 136
                                79******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MSNLQSTCQF FTPLPREGQE FEAVSGTEPH QAFKKPRVSK VGSDSMVIER RYKWLHYKTR  60
LCNNFKRGRC LYGEACLYAH GIEEIRNTLG SSANEKGMLG RTEFARHRTC DELRLCKLFL  120
NEGKCTYGEK CRFRHVIPKS IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-09C3H family protein