PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0042157.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 140aa    MW: 15364.6 Da    PI: 7.7068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0042157.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.44.7e-136388126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               ++++ C+f+++tG CkyG++C+++H+
  Rmu_sc0042157.1_g000001.1 63 PGEADCPFYLKTGSCKYGATCRYNHP 88
                               57899********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MQVWCTRKFN HPKDIQIPSA TQENKSGETE TALKTEGFEV AVKPLVSFSP ALLYYSKDLP  60
VRPGEADCPF YLKTGSCKYG ATCRYNHPDR YDINLPVAAI SYSLSAPSVA GFNMSLICFT  120
VKVGASPAVC PQRFGQAECE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-35C3H family protein