PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000022.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 243aa    MW: 28100 Da    PI: 4.9206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000022.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.9e-193993256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                 ++ +f++eq++ Le+ Fe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  Rmu_ssc0000022.1_g000013.1 39 NNKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 93
                                56788*************************************************9 PP
2HD-ZIP_I/II122.52e-3940131293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 +k+r+s+eq+++LE+ Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+
  Rmu_ssc0000022.1_g000013.1  40 NKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASRFEALKKEK 122
                                 79********************************************************************************* PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                 ++L ++l++
  Rmu_ssc0000022.1_g000013.1 123 QALVTQLQK 131
                                 *****9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MLEVDRVGYS PSPEEAEAFS YMNDSLGAGS SLKKKSSKNN KKRFSDEQIR SLESIFESES  60
RLEPRKKLQL AKELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILRANYNN LASRFEALKK  120
EKQALVTQLQ KLNDKMQRPK EERNNSIDGE SDNGDDATRS ESEGKPNYQM SLEKSEHRLR  180
VMSDDDSSIK AEYFGLEEEP NLVNFVESAD GSLTSPEDWG RLNSDGGLFD QSTSDYQWWD  240
FWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-72HD-ZIP family protein