PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000063.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 582aa    MW: 64654 Da    PI: 6.5395
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000063.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27312366156
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++
  Rmu_ssc0000063.1_g000009.1 312 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKTEGLTRHNVASHLQKYRMH 366
                                 5689*****************.********************************96 PP
2Myb_DNA-binding43.76.3e-14315364248
                                 SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                   WT+e+++++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
  Rmu_ssc0000063.1_g000009.1 315 VDWTPELHKKFVHAVEQLGVDqaIPSRILELMKtEGLTRHNVASHLQKYR 364
                                 57***********************************************7 PP
3Response_reg31.49.9e-12201261109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEEST CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtah 80 
                                 vl+ d++ +    +r+ le  +y +v+++ + +eal  +  +   +++ ++ ++ ++   G+++l++     ++lpii+ +  
  Rmu_ssc0000063.1_g000009.1  20 VLLLDEDTSSSAEIRSKLEAMDY-IVTTFCNETEALSAFSSNPesFHVSIVEVNTSKgDWGFQFLENA----KDLPIIMTSNI 97 
                                 7999999****************.***************777777************899****9754....46889999888 PP

                                 TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                    +++ +++ +Ga +fl Kp  +++l++
  Rmu_ssc0000063.1_g000009.1  98 HCLNTMMKCIALGAVEFLRKPLGEDKLRN 126
                                 88***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MVCTASDLEG WKDFPKGLRV LLLDEDTSSS AEIRSKLEAM DYIVTTFCNE TEALSAFSSN  60
PESFHVSIVE VNTSKGDWGF QFLENAKDLP IIMTSNIHCL NTMMKCIALG AVEFLRKPLG  120
EDKLRNIWQH VVHKAFNAGG KTVSESVKPV KESVVPMLQP KLENEPPKCK ISVVTENTSR  180
VLEHDHEQST GSDKYPAPST PQIKQGSRLL DDGDCQDQTN CLSEKESGEH DGESKSVETT  240
CGNANDTLQI SEPQMPEKIV VKQEKDSADV SKSDINLSQP HIIDGTNDTG RATENLSKAS  300
GLNHSYKSGR KKMKVDWTPE LHKKFVHAVE QLGVDQAIPS RILELMKTEG LTRHNVASHL  360
QKYRMHKRHI LPKDEDRRLL HPRDPNQMSY YPHKPIMAFP PYHYNSAVSM PPVYPMWGQP  420
ASHPANIQMW GSPSYPPWQV SESWHWNPSY PGLHADAWGC PVMPQPLQGG YSSYPQIASG  480
VNNTNVVDNG CSMPHNSSKH HPIASGLNNT NVVDNGCSMP HDSSELYPAE EIIDKVVKEA  540
MSKPWLPLPL GLKLPSTEGV LAELSRQGIC NIPPRINGST SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-140ARR-B family protein