PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000073.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 224aa    MW: 24822.2 Da    PI: 8.9693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000073.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171562148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  Rmu_ssc0000073.1_g000001.1 15 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 62
                                79******************************99************97 PP
2Myb_DNA-binding60.43.7e-1968112147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Rmu_ssc0000073.1_g000001.1  68 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 112
                                 89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
LMGRSPCCEK AHTNKGAWTK EEDDRLIAYI RAHGEGCWRS LPKAAGLLRC GKSCRLRWIN  60
YLRPDLKRGN FTEEEDELII KLHSLLGNKW SLIAGRLPGR TDNEIKNYWN THIRRKLLTR  120
GIDPATHRPL NETPQDSATT TTISFAASSA IIKEEDQKIS TTESLKSGGR GVCFSCSLGL  180
KDSKSCSSCG IDNIGATSAG TSNIAYDFLG LKNGVLDYRS LEMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-92MYB family protein