PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000092.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 491aa MW: 55670.8 Da PI: 6.1688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000092.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	211	257	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Rmu_ssc0000092.1_g000001.1 211 KGQWTIDEDRVLIQLVAQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 257 799***************************.***********97 PP
2	Myb_DNA-binding	58.2	1.9e-18	263	305	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Rmu_ssc0000092.1_g000001.1 263 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 305 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MEINKLRENL ASQIPLLVPE NNSYMMKPHN MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ 60 YANGSSSNPM FGVQNPCFEP YYNDNNAYTC DQGSPTDVNF YECKPLNIAD NLGHGQVLDN 120 FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP LTNSQDIKPM SFVAPDEVSC INSENGYYKR 180 AGINHKGTSR LSTIARAGST FKGRKKNNVV KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM 240 LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE DKILIQAHAE IGNKWAEIAK RLPGRTENSI 300 KNHWNATKRR QYSKRKCRSK YPRGSLLQDY IKSLNLDASP NTGRQRKNNN NSSNSSPADH 360 NNASTASTKV QSQINVGFNS ESDSRLVPNY EFSEEDPDFC FDENMFQEGC SIDSLLDDIP 420 CATDFGENGN DFDGKMMVSS DHEPFSVHDE KNFEVLAMQV DLGSAVMEST EVKKELDLVE 480 MMSQVNEADD A

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MEINKLRENL ASQIPLLVPE NNSYMMKPHN MKDEFIPFEA SSSSKGYLQD FHHLDNQFHQ  60
YANGSSSNPM FGVQNPCFEP YYNDNNAYTC DQGSPTDVNF YECKPLNIAD NLGHGQVLDN  120
FQSLNFPHPR SNSIGHMMGI SHRSGTNFLP LTNSQDIKPM SFVAPDEVSC INSENGYYKR  180
AGINHKGTSR LSTIARAGST FKGRKKNNVV KGQWTIDEDR VLIQLVAQYG VRKWSHIAQM  240
LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE DKILIQAHAE IGNKWAEIAK RLPGRTENSI  300
KNHWNATKRR QYSKRKCRSK YPRGSLLQDY IKSLNLDASP NTGRQRKNNN NSSNSSPADH  360
NNASTASTKV QSQINVGFNS ESDSRLVPNY EFSEEDPDFC FDENMFQEGC SIDSLLDDIP  420
CATDFGENGN DFDGKMMVSS DHEPFSVHDE KNFEVLAMQV DLGSAVMEST EVKKELDLVE  480
MMSQVNEADD A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-105	MYB family protein