PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000110.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 265aa    MW: 29018.1 Da    PI: 10.0286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000110.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-091131531055
                                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 r+RR+ + +++  L++llP+      kK++ a++Le A +Y++ Lq
  Rmu_ssc0000110.1_g000012.1 113 RKRRQTLSDKMRCLQKLLPWE-----KKMDNATTLEAAHRYVRFLQ 153
                                 9*******************9.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MPLSSYTLHE IITTRKAGRL SAPKTEPPLF HNRNHHQDQP PQYGAVSAQT SSVIDYYSIF  60
NHLPDLLSLD HSPYKRPRLL DHQTLASSYQ LYPTPAESPP APVVVPRGSS LARKRRQTLS  120
DKMRCLQKLL PWEKKMDNAT TLEAAHRYVR FLQAQVAALQ AMPIVASDSA GSLPVLTRGV  180
GGGSGEVEVL STLSRSQMLQ VAVNSPVAQM RMSDLGRCVF SVEQLALLNK KSVIRSAMVS  240
ASGHYYPTTT TTSFIDSSAS ASTTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.15e-24bHLH family protein