PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000116.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 262aa    MW: 29280.4 Da    PI: 10.0093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000116.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-1281129555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h e+Er+RR+++ + ++ Lr+ lP  +   ++K s ++   +Av+YIk+Lq
  Rmu_ssc0000116.1_g000013.1  81 HRENERQRRQEMATLYSCLRSKLPLEF--IKGKRSTSDHMNEAVNYIKHLQ 129
                                 99***********************65..*********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MFPLHQGNKL VFQISSSNPH HQNSSEDRIL GYASPDGCSS TVLSNNNNMG KSRRRKLVVA  60
ALDQTIIENS KDNKKKKMMI HRENERQRRQ EMATLYSCLR SKLPLEFIKG KRSTSDHMNE  120
AVNYIKHLQN RIKTLDAKRD EFKKFPKIST DVDRRCTTGS SLNSDQVNLP SCFTVQPSSG  180
GVQILVSGGF REDGLPLISI SSVLEILLGR GLTVVSCVSS QVNERLLHTI QIEVDDVESL  240
DLSALEQKLA KALPTSRSTI SK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-41bHLH family protein