PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000116.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 450aa MW: 49774.6 Da PI: 10.384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000116.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	256	308	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ ++ Lr+ lP+ + ++K s a+ Av++Ik+Lq Rmu_ssc0000116.1_g000014.1 256 KKMMHRDIERKRRQEMAALYASLRSTLPPqS---IKGKRSLADHMNDAVNHIKHLQ 308 6899***********************55...*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MMTMSATVLD ATLGIYQLGF EGWVHFHWKL FYAPTENSLS LMRMLIDSLR VFWAAGGGGS 60 IADCVASATH RRGSRRRNLL RCRIEIDRWL FREAKLQGGH SGGSGCRRGF VTAWVSWFQA 120 LAERCIRCFR PPGILLEVLV PSFSNQSSVQ VIKARQREVA EIIAPNQIHL ILVFIVRGKM 180 VWRKGKPPAD LLPATVVMTR QLDWTSFYLA QIWAWAVRPG LNSSQQISKS KKTNMLSSLM 240 DNDQPCANSI IDDSQKKMMH RDIERKRRQE MAALYASLRS TLPPQSIKGK RSLADHMNDA 300 VNHIKHLQTR IKELGAQRDD LKIQTSSPDL SCTSALGLAG NLSGSTGSSS SLLAGNFSRS 360 RVAVNPCLGG VEIIIISYVT GGSAEPQGVV LSRLLQILLE QGLTVINCAT TQVNKRLVYT 420 IQSEVSNPSY IDFPGLEQTL AKVVSSSTGF

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MMTMSATVLD ATLGIYQLGF EGWVHFHWKL FYAPTENSLS LMRMLIDSLR VFWAAGGGGS  60
IADCVASATH RRGSRRRNLL RCRIEIDRWL FREAKLQGGH SGGSGCRRGF VTAWVSWFQA  120
LAERCIRCFR PPGILLEVLV PSFSNQSSVQ VIKARQREVA EIIAPNQIHL ILVFIVRGKM  180
VWRKGKPPAD LLPATVVMTR QLDWTSFYLA QIWAWAVRPG LNSSQQISKS KKTNMLSSLM  240
DNDQPCANSI IDDSQKKMMH RDIERKRRQE MAALYASLRS TLPPQSIKGK RSLADHMNDA  300
VNHIKHLQTR IKELGAQRDD LKIQTSSPDL SCTSALGLAG NLSGSTGSSS SLLAGNFSRS  360
RVAVNPCLGG VEIIIISYVT GGSAEPQGVV LSRLLQILLE QGLTVINCAT TQVNKRLVYT  420
IQSEVSNPSY IDFPGLEQTL AKVVSSSTGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	269	ERKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	8e-40	bHLH family protein