PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000116.1_g000053.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22737.9 Da    PI: 8.2212
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000116.1_g000053.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.5e-27959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                k+ienk+nrqvtfskRr g++KKA+E+SvLCda+va+i+  s+gk+++++s
  Rmu_ssc0000116.1_g000053.1  9 KKIENKINRQVTFSKRRLGLFKKAQEISVLCDAQVALIVSCSRGKVFDFAS 59
                                68**********************************************986 PP
2K-box64.63.5e-226012634100
                       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                 ++ h+lGedLe+L lkeL++Le+qL++ l++ R++K++++l+q+e l++ke++l+e++k+L+++lee
  Rmu_ssc0000116.1_g000053.1  60 TNEHFLGEDLEKLRLKELENLEKQLDRTLSQARQRKMQMMLDQLEALRRKENDLEEIHKQLKSELEE 126
                                 6689***********************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MGRGKVELKK IENKINRQVT FSKRRLGLFK KAQEISVLCD AQVALIVSCS RGKVFDFAST  60
NEHFLGEDLE KLRLKELENL EKQLDRTLSQ ARQRKMQMML DQLEALRRKE NDLEEIHKQL  120
KSELEEREKH SDNDDDEALI QGRPGGEPTV AAGASHENIS TKTRSANANQ QEPTYEYGKD  180
LLYMNLKLLT LVNTVQKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.14e-27MIKC_MADS family protein